PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000915616
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 315aa    MW: 33467.9 Da    PI: 9.1085
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000915616genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.71e-3863147286
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 
                    a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i ++tgt++++as+   a+ s+s+++  s
  MDP0000915616  63 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIMAATGTGTIPASALaAAGGSVSQQG-TS 147
                    789******************************************************************99854444444433.22 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.9E-3168187IPR005333Transcription factor, TCP
PROSITE profilePS5136927.56769123IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDPKGSKQTQ DIPSFLSLPP QPQQQQQPPP QPNNNMNDDK PAEIKDFQIV IADKDESGKK  60
QLAPKRSSNK DRHTKVEGRG RRIRMPALCA ARIFQLTREL GHKSDGETIQ WLLQQAEPSI  120
MAATGTGTIP ASALAAAGGS VSQQGTSLSA GLHQKIDELG GSSGGRTSWA MVGGNLGRPH  180
VAGVGGLWPP VSSFGFQSSS GPPSATTNLG SESSNYLQKI GXPGFDLPVS NMGPMSFTSI  240
LGGGNQQQQQ LPGLELGLSQ DGHIGVLNSQ ALSQIYQQMG HARVHQQPPQ HHQQQHHHHH  300
QQPPSKDDSQ GSGQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.113310.0bud| fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBMTransfer from Glyma.19G095300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008362098.10.0PREDICTED: transcription factor TCP20-like
SwissprotQ9LSD56e-80TCP20_ARATH; Transcription factor TCP20
TrEMBLD9ZJC91e-155D9ZJC9_MALDO; TCP domain class transcription factor
STRINGVIT_14s0068g01690.t011e-151(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33393269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.19e-61TCP family protein